Update History

• Upgraded to PrimeFaces 12.0.0 (11/14/2022)
• Minor text updates and added new tutorial (10/25/2022)
• Added F. candida to kallisto database (09/14/2022)
• Please reach us at the EcoOmicsAnalyst user forum! (08/15/2022)
• Added S. mansoni to kallisto database (07/26/2022)
• Updated database to phylogenetic tree based grouping (07/11/2022)
• Change JQ transcriptome index to cds from genome (05/05/2022)
• Added warning message to some email addresses (05/04/2022)
• Changed JQ transcriptome from ensemble to NCBI (04/29/2022)
• Added example metadata files for EOA local (04/8/2022)
• Updated FAQ for the EOA local (04/7/2022)
• Added the EOA local version (04/6/2022)
• Changed networkanalyst to expressanalyst (03/16/2022)
• Updated core orthologs (03/14/2022)
• Updated databases with consistent s2f id, which can be used in EcoOmicsDB (03/02/2022)
• Updated seq2fun_v2.0.2 to seq2fun_v2.0.3 (03/02/2022)
• Added project description to analysis_parameter.txt (02/08/2022)
• Fixed a bug in project description (02/08/2022)
• Fixed a bug in Rarefaction curve (02/07/2022)
• Added job description in job view page(02/06/2022)
• Merged Kallisto and Seq2Fun modules in all main pages (02/06/2022)
• Added number of sample groups to reduce typos (02/01/2022)
• Removal of Salmon module (02/01/2022)
• Replaced seq2fun v2.0.0 with v2.0.2 (01/30/2022)
• Updated project home to sort projects by date (01/23/2022)
• Added an analysis parameter output file (01/22/2022)
• Fixed the project reload issue based on user feedback (01/20/2022)
• Updated project results page (01/18/2022)
• Updated result files and only keep the most important files for downloading (01/17/2022)
• Replaced NCBI ortholog database with orthofinder database (01/13/2022)
• Updated FAQs and add EOA workflow (01/10/2022)
• Replaced Seq2Fun V1 to Seq2Fun V2 (01/08/2022)
• Upgraded to PrimeFaces 11 (12/20/2021)
• Updated mapping table (11/27/2021)
• Added hyalella azteca database (11/26/2021)
• Updated rainbow trout database (10/13/2021)
• Added more parameter options for single read in Kallisto module(08/23/2021)
• Added an option for filter reads quality in salmon module(08/04/2021)
• Separated model and non model orgs (06/28/2021)
• Now fully support Kallisto module (06/28/2021)
• Updated test data (06/17/2021)
• Updated uploading page (06/16/2021)
• Updated home page and results page (06/16/2021)
• Fixed bugs to support figure regeneration (06/15/2021)
• Added support for script downloading for reproducibility (06/09/2021)
• Added support checking running job from project list (06/08/2021)
• Added functions to enable sample name editing (06/03/2021)
• Updated databases of salmon module (05/31/2021)
• Added Salmon module to process RNA-seq data for organisms with references (05/27/2021)
• Added functions to process tables and figures in slurm (05/20/2021)
• First release of EcoOmicsAnalyst (05/13/2021)