Sample Group totalReads cleanReads percentageReads mappedReads percentageMappedReads nTotalOrtho nOrtho percentageOrtho A1.CE2-S1 control 5000000 4936912 98.73824 2759670 55.8987075321578 24076 12934 53.7215 A3.CE1-M2 medium 5000000 4923189 98.46378 2639455 53.612709160668 24076 13403 55.6695 A4.CE1-H5 high 5000000 4917169 98.34338 2624164 53.367374601117 24076 13692 56.8699 B1.CE2-S2 control 5000000 4926504 98.53008 2278291 46.245593223917 24076 14210 59.0214 B3.CE1-M3 medium 5000000 4898164 97.96328 2595591 52.9911003388208 24076 13393 55.6280 C1.CE2-S3 control 5000000 4939962 98.79924 2747443 55.6166828813663 24076 12860 53.4142 C3.CE1-M4 medium 5000000 4921367 98.42734 2596790 52.7656238601998 24076 13549 56.2760 D1.CE2-S4 control 5000000 4933197 98.66394 2678405 54.2934936512773 24076 13573 56.3756 D3.CE1-M5 medium 5000000 4931822 98.63644 2519941 51.0955383223482 24076 13957 57.9706 E1.CE2-S5 control 5000000 4931514 98.63028 2664473 54.029513046095 24076 13111 54.4567 E3.CE1-H1 high 5000000 4919639 98.39278 2597633 52.8012929403966 24076 13379 55.5699 F3.CE1-H2 high 5000000 4933178 98.66356 2577726 52.2528479612939 24076 13853 57.5386 G3.CE1-H3 high 5000000 4940617 98.81234 2523230 51.0711516395624 24076 13937 57.8875 H2.CE1-M1 medium 5000000 4933749 98.67498 2724923 55.2302721520694 24076 13259 55.0714 H3.CE1-H4 high 5000000 4951393 99.02786 2699896 54.5280085826352 24076 13465 55.9271